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quantsmooth

This is the development version of quantsmooth; for the stable release version, see quantsmooth.

Quantile smoothing and genomic visualization of array data


Bioconductor version: Development (3.19)

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("quantsmooth")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("quantsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("quantsmooth")
quantsmooth PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Software, Visualization
Version 1.69.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL-2
Depends R (>= 2.10.0), quantreg, grid
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me beadarraySNP
Imports Me GWASTools, SIM
Suggests Me PREDA
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package quantsmooth_1.69.0.tar.gz
Windows Binary quantsmooth_1.69.0.zip
macOS Binary (x86_64) quantsmooth_1.69.0.tgz
macOS Binary (arm64) quantsmooth_1.69.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/quantsmooth
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/quantsmooth
Bioc Package Browser https://code.bioconductor.org/browse/quantsmooth/
Package Short Url https://bioconductor.org/packages/quantsmooth/
Package Downloads Report Download Stats