rnaEditr

DOI: 10.18129/B9.bioc.rnaEditr    

This is the development version of rnaEditr; for the stable release version, see rnaEditr.

Statistical analysis of RNA editing sites and hyper-editing regions

Bioconductor version: Development (3.13)

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Author: Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]

Maintainer: Lanyu Zhang <jennyzly2016 at gmail.com>

Citation (from within R, enter citation("rnaEditr")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rnaEditr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaEditr")

 

HTML R Script Introduction to rnaEditr
PDF   Reference Manual
Text   NEWS

Details

biocViews DimensionReduction, Epigenetics, FeatureExtraction, GeneTarget, RNASeq, Regression, Software, Survival
Version 1.1.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0)
Imports GenomicRanges, IRanges, BiocGenerics, GenomeInfoDb, bumphunter, S4Vectors, stats, survival, logistf, plyr, corrplot
LinkingTo
Suggests knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/TransBioInfoLab/rnaEditr
BugReports https://github.com/TransBioInfoLab/rnaEditr/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rnaEditr_1.1.0.tar.gz
Windows Binary rnaEditr_1.1.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) rnaEditr_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rnaEditr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rnaEditr
Package Short Url https://bioconductor.org/packages/rnaEditr/
Package Downloads Report Download Stats

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