scHiCcompare
Differential Analysis of Single-cell Hi-C Data
Bioconductor version: 3.24 · Package version: 1.5.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides functions for differential chromatin interaction analysis between two single-cell Hi-C data groups. It includes tools for imputation, normalization, and differential analysis of chromatin interactions. The package implements pooling techniques for imputation and offers methods to normalize and test for differential interactions across single-cell Hi-C datasets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scHiCcompare")Details
| Maintainer | My Nguyen <hamy.12398@gmail.com> |
| Author | My Nguyen [aut, cre] (ORCID: <https://orcid.org/0009-0003-1118-7085>), Mikhail Dozmorov [aut] (ORCID: <https://orcid.org/0000-0002-0086-8358>) |
| License | MIT + file LICENSE |
| URL | https://github.com/dozmorovlab/ScHiCcompare |
| Bug Reports | https://github.com/dozmorovlab/ScHiCcompare/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | HiC, Normalization, Sequencing, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/scHiCcompare/ |
Citation
From within R, enter citation("scHiCcompare"):
My Nguyen, Mikhail Dozmorov. scHiCcompare: Differential Analysis of Single-cell Hi-C Data. doi:10.18129/B9.bioc.scHiCcompare, R package version 1.5.0, https://bioconductor.org/packages/scHiCcompare.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | scHiCcompare_1.5.0.tar.gz |
| Windows binary (x86_64) | scHiCcompare_1.5.0.zip |
| macOS binary (arm64) | scHiCcompare_1.5.0.tgz |
| macOS binary (x86_64) | scHiCcompare_1.5.0.tgz |