scLang
A unified language for interacting with Seurat and SingleCellExperiment
Bioconductor version: 3.24 · Package version: 1.1.3
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
scLang is a suite for package development for scRNA-seq analysis. It offers functions that can operate on both Seurat and SingleCellExperiment objects. These functions are primarily aimed to help developers build tools compatible with both types of input.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scLang")Details
| Maintainer | Andrei-Florian Stoica <andreistoica@foxmail.com> |
| Author | Andrei-Florian Stoica [aut, cre] (ORCID: <https://orcid.org/0000-0002-5253-0826>) |
| License | MIT + file LICENSE |
| URL | https://github.com/andrei-stoica26/scLang |
| Bug Reports | https://github.com/andrei-stoica26/scLang/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, SingleCell, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/scLang/ |
Citation
From within R, enter citation("scLang"):
Andrei-Florian Stoica. scLang: A unified language for interacting with Seurat and SingleCellExperiment. doi:10.18129/B9.bioc.scLang, R package version 1.1.3, https://bioconductor.org/packages/scLang.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | scLang_1.1.3.tar.gz |
| Windows binary (x86_64) | scLang_1.1.3.zip |
| macOS binary (arm64) | scLang_1.1.3.tgz |
| macOS binary (x86_64) | scLang_1.1.3.tgz |
Dependencies
Imports: dplyr, ggplot2, henna, methods, paletteer, rlang, S4Vectors, SeuratObject, SingleCellExperiment, stats, SummarizedExperiment
Suggests: BiocStyle, knitr, qs2, rmarkdown, scater, scRNAseq, Seurat, testthat (>= 3.0.0)
Reverse dependencies
Imports Me (2): GSABenchmark, hammers