sparseMatrixStats
Summary Statistics for Rows and Columns of Sparse Matrices
Bioconductor version: 3.24 · Package version: 1.25.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sparseMatrixStats")Details
| Maintainer | Constantin Ahlmann-Eltze <artjom31415@googlemail.com> |
| Author | Constantin Ahlmann-Eltze [aut, cre] (ORCID: <https://orcid.org/0000-0002-3762-068X>) |
| License | MIT + file LICENSE |
| URL | https://github.com/const-ae/sparseMatrixStats |
| Bug Reports | https://github.com/const-ae/sparseMatrixStats/issues |
| System Requirements | C++11 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataRepresentation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/sparseMatrixStats/ |
Citation
From within R, enter citation("sparseMatrixStats"):
Constantin Ahlmann-Eltze. sparseMatrixStats: Summary Statistics for Rows and Columns of Sparse Matrices. doi:10.18129/B9.bioc.sparseMatrixStats, R package version 1.25.0, https://bioconductor.org/packages/sparseMatrixStats.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | sparseMatrixStats_1.25.0.tar.gz |
| Windows binary (x86_64) | sparseMatrixStats_1.25.0.zip |
| macOS binary (arm64) | sparseMatrixStats_1.25.0.tgz |
| macOS binary (x86_64) | sparseMatrixStats_1.25.0.tgz |
Dependencies
Depends: MatrixGenerics (>= 1.5.3)
Imports: Rcpp, Matrix, matrixStats (>= 0.60.0), methods
LinkingTo: Rcpp
Suggests: testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
Reverse dependencies
Imports Me (23): adjclust, atena, betterChromVAR, ccImpute, concordexR, Coralysis, CRMetrics, DelayedMatrixStats, DenoIST, dreamlet, fishash, GrabSVG, GSVA, modelSelection, mombf, scBSP, scone, Seqtometry, Signac, SimBu, smartid, SplineDV, SPOTlight
Suggests Me (14): APL, blase, dbMatrix, DuckDBArray, MatrixGenerics, miloR, plaid, scPCA, scuttle, SigBridgeRUtils, singleCellHaystack, SpatialFeatureExperiment, StabMap, zinbwave