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webbioc

This is the development version of webbioc; for the stable release version, see webbioc.

Bioconductor Web Interface


Bioconductor version: Development (3.19)

An integrated web interface for doing microarray analysis using several of the Bioconductor packages. It is intended to be deployed as a centralized bioinformatics resource for use by many users. (Currently only Affymetrix oligonucleotide analysis is supported.)

Author: Colin A. Smith <colin at colinsmith.org>

Maintainer: Colin A. Smith <colin at colinsmith.org>

Citation (from within R, enter citation("webbioc")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("webbioc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("webbioc")
webbioc Demo Script PDF
webbioc Overview PDF
Reference Manual PDF

Details

biocViews DifferentialExpression, Infrastructure, Microarray, OneChannel, Software
Version 1.75.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>= 2)
Depends R (>= 1.8.0), Biobase, affy, multtest, annaffy, vsn, gcrma, qvalue
Imports multtest, qvalue, stats, utils, BiocManager
System Requirements Unix, Perl (>= 5.6.0), Netpbm
URL http://www.bioconductor.org/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package webbioc_1.75.0.tar.gz
Windows Binary webbioc_1.75.0.zip
macOS Binary (x86_64) webbioc_1.75.0.tgz
macOS Binary (arm64) webbioc_1.75.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/webbioc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/webbioc
Bioc Package Browser https://code.bioconductor.org/browse/webbioc/
Package Short Url https://bioconductor.org/packages/webbioc/
Package Downloads Report Download Stats