wiggleplotr
This is the development version of wiggleplotr; for the stable release version, see wiggleplotr.
All Bioconductor versions of wiggleplotr
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5
Make read coverage plots from BigWig files
Bioconductor version: 3.24 · Package version: 1.37.0
Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.
Author: Kaur Alasoo [aut, cre]
Maintainer: Kaur Alasoo <kaur.alasoo at gmail.com>
Citation
From within R, enter citation("wiggleplotr"):
Kaur Alasoo. wiggleplotr: Make read coverage plots from BigWig files. doi:10.18129/B9.bioc.wiggleplotr, R package version 1.37.0, https://bioconductor.org/packages/wiggleplotr.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("wiggleplotr")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.37.0 |
| License | Apache License 2.0 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9 years) |
| Downloads rank | 866 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | AlternativeSplicing, ChIPSeq, Coverage, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription, Visualization |
| Package Short Url | https://bioconductor.org/packages/wiggleplotr/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("wiggleplotr")| Introduction to wiggleplotr | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | wiggleplotr_1.37.0.tar.gz |
| Windows binary (x86_64) | wiggleplotr_1.37.0.zip |
| macOS binary (arm64) | wiggleplotr_1.37.0.tgz |
| macOS binary (x86_64) | wiggleplotr_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/wiggleplotr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/wiggleplotr |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.6)
Imports: dplyr, ggplot2 (>= 2.2.0), GenomicRanges, rtracklayer, cowplot, assertthat, purrr, S4Vectors, IRanges, GenomeInfoDb
Suggests: knitr, rmarkdown, biomaRt, GenomicFeatures, testthat, ensembldb, EnsDb.Hsapiens.v86, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi, AnnotationFilter, arrow
Reverse dependencies
Imports Me (3): chevreulPlot, chevreulShiny, factR
Suggests Me (1): splicelogic