prebs 1.7.1 =========== * Introduced a new parameter sum.method. It is used to choose the microarray summarization mode: RPA or RMA. The default value is RPA. prebs 1.5.3 =========== * Introduced new parameter paired_ended_reads. When the data contains paired-ended reads, this parameter should be set to TRUE. Otherwise, the two read mates will be treated as independent units. * Introduced new parameter ignore_strand. If set to TRUE then the strand from which read comes is ignored when counting overlaps. If you use strand-specific RNA-seq protocol, you should set it to FALSE, otherwise set it to TRUE.