Changes in version 0.3.1 (2020-09-08) + made this third iteration of ramr search engine a usable package + uploaded to GitHub Changes in version 0.3.2 (2020-10-30) + added function documentation + added sample data + initial code cleanup + fixed single-thread issue in getAMR() Changes in version 0.3.7 (2020-11-16) + added vignettes + added unit tests + added data documentation + fixed issue with plot titles and highlighted samples in plotAMR() + fixed all notes and warnings in devtools::check() Changes in version 0.3.9 (2020-11-20) + code cleanup + paper submitted to bioRxiv + updated README and vignettes + added NEWS + made GitHub repository public Changes in version 0.99.2 (2020-12-21) + code cleanup for bioconductor + initial submission to bioconductor Changes in version 1.1.0 (2021-05-21) + released at bioconductor Changes in version 1.1.2 (2021-05-28) + reviewers' suggestions were implemented, docs updated, typos fixed + new methods for simulation of AMR and test data sets + NULL as a default for data.samples (to use all) + doRNG is used to ensure reproducibility during parallel computing + a couple of new defaults for previously required parameters for easy usage