Changes in version 1.5.0 Please note that this Bioconductor version is based on Goslin version 2.0.0. See the Goslin repository and Goslin C++ repository for more details. BioConductor 3.18 - Changes in 1.5.0 Improvements - Better handling of mediators - Translating gangliosides into new nomenclature structure - Updated HMDB grammar for parsing mediators in lipid names: e.g., PA(P-16:0/LTE4) - Parsing of adducts with heavy labeled isotopes now possible Bug Fixes - Minor bug fixes - Removed wrong Lyso classification for SPB, SPBP, LHexCer, LSM Changes in version 1.4.0 Please note that this Bioconductor version is based on Goslin version 2.0.0. See the Goslin repository and Goslin C++ repository for more details. BioConductor 3.17 - Changes in 1.4.0 Improvements - Improved handling of Glycosphingolipids and carbohydrates - Improved headgroup normalization for Glycosphingolipids. - Added PMeOH. - Added TG-EST (estolide) Estolides [GL0305]. - Added more sterol variants. Bug Fixes - Fixed classification of SB1a as Sulfoglycosphingolipids (sulfatides) [SP0602]. - Fixed classification of SHex2Cer as Sulfoglycosphingolipids (sulfatides) [SP0602]. - Fixed classification of SMGDG as Glycosylalkylacylglycerols [GL0502], added synonym seminolipid. - Fixed classification of SQDG Glycosyldiacylglycerols [GL0501]. - Fixed classification of sterols. BioConductor 3.16 - Changes in 1.2.0 - No noteworthy changes. BioConductor 3.15 - Changes in 1.0.0 Improvements - Reduced memory consumption. - Added 'ChE' abbreviation. - Added FG hydroperoxy to mediator nomenclature, refinement of mediators. - Added more sphingosine and sphinganine synonyms. - Added more ether dialects to LipidMaps grammar. - Improved handling for SP without explicit OH description. - Added Sa So support. - Updated old SP shortcuts. - Added CholE as abbreviation for cholesterol esters. - Modifications and improvements for Windows. - Added column of elements to functional group list and class. - Added 'ChoE'. - Added functional group butylperoxy -> BOO. Bug Fixes - Fixed handling of LIPID MAPS SP notation. - Fixed critical bug when parsing LIPID MAPS names. - Fixed implicit hydroxy count. - Fixed ACer rule for species level. - Fixed lcb rule in LipidMaps grammar. - Fixed S1P and Sa1P handling. - Fixed gangliosides in Goslin grammar. - Fixed correct handling of dummy FAs during sorting. - Fixed segmentation fault in FA parser event handler. Changes in 0.99.1 - The column names within the data frames returned from the parse* methods now use column names with dots instead of spaces. This makes it easier to use the column names unquoted within other R expressions. - All parse* methods now return data frames. - The Messages column has been added to capture parser messages. If parsing succeeds, this will contain NA and Normalized.Name will contain the normalized lipid shorthand name. - Parser implementations have been updated to reflect the latest lipid shorthand nomenclature changes. Please see the Goslin repository for more details. - Exceptions in the C++ part of the library are captured as warnings in R. However, if you parse multiple lipid names, exceptions will not stop the parsing process.