79b0e5dfe1da02efc08a058a83ba9827 *DESCRIPTION
ff16c12ab6c9fff1cd77d8c2536abffe *NAMESPACE
63e6ec893455ed3140ffc53a51eedb7d *NEWS
9bd5478decde9ddd765d06c45d15e274 *R/analyzeDuprates.R
88adf9b8db12d7bab6b8645fa6296f0e *R/cumulativeDuprateBarplot.R
b6408fcc11843ee2414a4732a3809f7a *R/dupRadar-package.R
a713662e0c6ad00d5a584847a9c98849 *R/duprateExpBoxplot.R
baa1aa661d3bf3e0300d874dfc1c67fb *R/duprateExpDensPlot.R
49d69b7fa67534385af1f9870b200247 *R/duprateExpFit.R
81f53cccb5ab2a376a15d78fc2125b61 *R/duprateExpIdentify.R
8b51f23c3e3e5b4592366598c1c47075 *R/duprateExpPlot.R
59ff2b5075a29700bb9a0ac78f76d20c *R/expressionHist.R
557d7b69247af19c1ec0064f5fdf24bf *R/getBinDuplication.R
f6e4f444bafc24e5829a148f8021aac5 *R/getBinRpkMean.R
cbae3968b05f4e5e1db39a149d26312d *R/getDupMatBin.R
d772d0aba4247e977b5c1e7f58768c9e *R/getDupMatStats.R
25c3f541037812e6d3cdcdafaaa275ae *R/getDynamicRange.R
0b2d742d0822a27dd83a4f3458e947e0 *R/getRpkBinReadCountFraction.R
349677962f9797520a3523862ba63610 *R/getRpkCumulativeReadCountFraction.R
32e545f0ae80d33efa76f2c686db8215 *R/markDuplicates.R
03a11648a83c72a9eb9ad89fceb0fc7c *R/readcountExpBoxplot.R
f2a7715a18bc693492234dc5eb37fc2f *README.md
c736cf5496174530238a2ca717e9078a *build/vignette.rds
dfb89907c7909e6364bfe36719f847f8 *data/datalist
2a11bb8397eb1aff3597880686623a25 *data/dupRadar_examples.RData
31b84a009181436dc2c3003c78646b97 *inst/CITATION
1c8ab3ede2235acdfaf900e61a5bde2d *inst/doc/dupRadar.R
ba08ffebb211a610973dc9f62db6d444 *inst/doc/dupRadar.Rmd
661671f7ce2839782805f2e01ea89704 *inst/doc/dupRadar.html
7e7554434b18e932c8a6faba6b49269e *inst/extdata/genes.gtf
2a0bdabb138ff7f4dc1ead9a5694e73e *inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2.bam
9bf17e3de0849f5d9044a7f8bcfb12eb *inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2.bam.bai
014ffa68f83b274892f482b622383d16 *inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2_duprm.bam
076c991c977d27c48fd464606fc8869b *inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2_duprm.bam.log
f7c179e82cbe2159ad856a0a9712fe01 *man/analyzeDuprates.Rd
1bb571bdbbd258822844360027dbc94f *man/bamutilMarkDuplicates.Rd
e455caf917946b39f1cce3e3b11d4651 *man/cumulativeDuprateBarplot.Rd
d04adb0ddac651218aed59aeb836db58 *man/dm.Rd
60549b3508efd67a7e3b39d02fe5702f *man/dm.bad.Rd
b21a206ba80ef70fc9751cf76795da89 *man/dupRadar.Rd
4132f4c0e5f5d2c74f8e1668e4726a1d *man/dupRadar_examples.Rd
ca394d2f2da80a45a23d7703f67f5dd7 *man/duprateExpBoxplot.Rd
9bdcfe24672bc56e6e0ba6e504d44e71 *man/duprateExpDensPlot.Rd
fda2e37a943a9c65df4ef50d180fd9bf *man/duprateExpFit.Rd
aea3d2775ae4b230d629e6b2beecc423 *man/duprateExpIdentify.Rd
6f91863d0ac9ef081b36a68b93ef3cdb *man/duprateExpPlot.Rd
667b1d9a0a40274145fe16ad3e5a47a9 *man/expressionHist.Rd
a1087124ff486540b9cf38243e435104 *man/getBinDuplication.Rd
84529d4660faf7feffdf99569117de02 *man/getBinRpkMean.Rd
560e703ec1ee9a373c6325703da20349 *man/getDupMatBin.Rd
eaaa1be5db3ce78dab78c479c5872b37 *man/getDupMatStats.Rd
d58745e2f81e6f06d2a934802d48bfdd *man/getDynamicRange.Rd
ea454d7ce62195f4d1971b35de85a0fd *man/getRpkBinReadCountFraction.Rd
e1b7af32e6db4871ab4dcce29cc00e59 *man/getRpkCumulativeReadCountFraction.Rd
880d00602f0e578d695b4ac476cdea16 *man/markDuplicates.Rd
30872418411663d34c163f9492635dd6 *man/picardMarkDuplicates.Rd
1c38c8283929f8fe3c7c756ee1a220dc *man/readcountExpBoxplot.Rd
ba08ffebb211a610973dc9f62db6d444 *vignettes/dupRadar.Rmd
99033a5f2bfba2bc15bfbb954618d575 *vignettes/figures/GCcontent.svg
c45dd840f9afc230ad3dad639021d6ea *vignettes/figures/GCdependence.png
69d4ede829e7081aa5b0a996c332e6e9 *vignettes/figures/encode.svg
