VERSO is an algorithmic framework that processes variants profiles from viral samples, to produce phylogenetic models of viral evolution from clonal variants and to subsequently quantify the intra-host genomic diversity of samples. VERSO includes two separate and subsequent steps; in this repository we provide an R implementation of VERSO STEP 1.
The R version of VERSO can be installed from Bioconductor. To do so, we need to install the R packages VERSO depends on and the devtools package.
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("VERSO")