## ----style, echo = FALSE, results = 'asis', message=FALSE--------------------- BiocStyle::markdown() ## ----load-lib, message = FALSE------------------------------------------------ library(AnnotationHub) ah <- AnnotationHub() ## ----list-ensdb--------------------------------------------------------------- query(ah, "EnsDb") ## ----load-ensdb--------------------------------------------------------------- qr <- query(ah, c("EnsDb", "intestinalis", "87")) edb <- qr[[1]] ## ----get-genes---------------------------------------------------------------- genes(edb) ## ----load-lib2, eval = FALSE-------------------------------------------------- # library(ensembldb) # # scr <- system.file("scripts/generate-EnsDBs.R", package = "ensembldb") # source(scr) # ## ----create-dbs, eval = FALSE------------------------------------------------- # createEnsDbForSpecies(ens_version = 87, user = "someuser", host = "localhost", # pass = "somepass")