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MMDiffBamSubset

This is the development version of MMDiffBamSubset; for the stable release version, see MMDiffBamSubset.

Example ChIP-Seq data for the MMDiff package


Bioconductor version: Development (3.20)

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Citation (from within R, enter citation("MMDiffBamSubset")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MMDiffBamSubset")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ArrayExpress, ChIPSeqData, DNASeqData, ExperimentData, Genome, Mus_musculus_Data, StemCell
Version 1.41.0
License LGPL
Depends
Imports
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Suggests MMDiff2
Linking To
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MMDiffBamSubset_1.41.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MMDiffBamSubset
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MMDiffBamSubset
Package Short Url https://bioconductor.org/packages/MMDiffBamSubset/
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