eQTL

 

This is the development version of eQTL; for the stable release version, see eQTL.

Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x

Bioconductor version: Development (3.9)

This workflow focuses on searches for eQTL in cis, so that DNA variants local to the gene assayed for expression are tested for association.

Author: Vincent Carey [aut, cre]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("eQTL")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("eQTL", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eQTL")

 

HTML R Script Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x

Details

biocViews GenomicVariantsWorkflow, Workflow
Version 1.7.0
License Artistic-2.0
Depends R (>= 3.3.0), GGdata, GGtools, GenomeInfoDb, S4Vectors, SNPlocs.Hsapiens.dbSNP144.GRCh37, bibtex, biglm, data.table, doParallel, foreach, knitcitations, lumi, lumiHumanAll.db, parallel, rmeta, scatterplot3d, snpStats, grid, yri1kgv
Imports
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://www.bioconductor.org/help/workflows/eQTL/
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eQTL_1.7.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/eQTL
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eQTL
Package Short Url http://bioconductor.org/packages/eQTL/
Package Downloads Report Download Stats

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