enrichplot

This is the released version of enrichplot; for the devel version, see enrichplot.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Visualization of Functional Enrichment Result

Bioconductor version: Release (3.23)

The 'enrichplot' package provides visualization methods for interpreting functional enrichment results from ORA or GSEA analyses. It is designed to work with the 'clusterProfiler' ecosystem and builds on 'ggplot2' for flexible and extensible graphics.

Author: Guangchuang Yu [aut, cre] ORCID: 0000-0002-6485-8781 , Chun-Hui Gao [ctb] ORCID: 0000-0002-1445-7939

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")):

Guangchuang Yu. enrichplot: Visualization of Functional Enrichment Result. doi:10.18129/B9.bioc.enrichplot, R package version 1.32.1, https://bioconductor.org/packages/enrichplot.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("enrichplot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")

enrichplot	HTML
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization
Version	1.32.1
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	Artistic-2.0
Depends	R (>= 4.2.0)
Imports	aplot (>= 0.2.1), DOSE, dplyr, enrichit, ggfun (>= 0.1.7), ggnewscale, ggplot2 (>= 3.5.0), ggrepel (>= 0.9.0), ggtangle (>= 0.0.9), ggtree, GOSemSim (>= 2.37.2), graphics, grid, igraph, methods, purrr, RColorBrewer, reshape2, rlang, scatterpie, stats, tidydr, utils, yulab.utils (>= 0.2.2)
System Requirements
URL	https://yulab-smu.top/contribution-knowledge-mining/
Bug Reports	https://github.com/GuangchuangYu/enrichplot/issues

Suggests	AnnotationDbi, clusterProfiler, europepmc, ggarchery, ggforce, ggHoriPlot, ggplotify, ggridges, ggstar, ggtreeExtra, ggupset, glue, grDevices, gridExtra, gson, org.Hs.eg.db, quarto, scales, tibble, tidyr
Linking To
Enhances
Depends On Me
Imports Me	carnation, CBNplot, ChIPseeker, clusterProfiler, damidBind, debrowser, enrichViewNet, epiSeeker, ExpHunterSuite, famat, goatea, MicrobiomeProfiler, ReactomePA
Suggests Me	easyEWAS, GeoTcgaData, ggpicrust2, IOBR, ivolcano, mastR, methylGSA, ReporterScore, scFeatures, scGraphVerse, SCpubr, TDbasedUFEadv, tidybulk, VISTA
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	enrichplot_1.32.1.tar.gz
Windows Binary (x86_64)	enrichplot_1.31.2.zip (64-bit only)
macOS Binary (big-sur-x86_64)	enrichplot_1.32.0.tgz
macOS Binary (sonoma-arm64)	enrichplot_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/enrichplot
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/enrichplot
Package Short Url	https://bioconductor.org/packages/enrichplot/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive