esetVis

This is the released version of esetVis; for the devel version, see esetVis.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Visualizations of expressionSet Bioconductor object

Bioconductor version: Release (3.23)

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("esetVis")):

Laure Cougnaud. esetVis: Visualizations of expressionSet Bioconductor object. doi:10.18129/B9.bioc.esetVis, R package version 1.38.0, https://bioconductor.org/packages/esetVis.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("esetVis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("esetVis")

esetVis package	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization
Version	1.38.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	GPL-3
Depends
Imports	mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods
System Requirements
URL

Suggests	ggplot2, ggvis, plotly, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment, GO.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	esetVis_1.38.0.tar.gz
Windows Binary (x86_64)	esetVis_1.38.0.zip
macOS Binary (big-sur-x86_64)	esetVis_1.38.0.tgz
macOS Binary (sonoma-arm64)	esetVis_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/esetVis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/esetVis
Package Short Url	https://bioconductor.org/packages/esetVis/
Package Downloads Report	Download Stats