hypeR

This is the released version of hypeR; for the devel version, see hypeR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

An R Package For Geneset Enrichment Workflows

Bioconductor version: Release (3.23)

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut], Andrew Chen [aut, cre], Stefano Monti [aut]

Maintainer: Andrew Chen <andrewdr at bu.edu>

Citation (from within R, enter citation("hypeR")):

Anthony Federico, Andrew Chen, Stefano Monti. hypeR: An R Package For Geneset Enrichment Workflows. doi:10.18129/B9.bioc.hypeR, R package version 2.10.0, https://bioconductor.org/packages/hypeR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

hypeR	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, GeneSetEnrichment, Pathways, Software
Version	2.10.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.6.0)
Imports	ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny, BiocStyle
System Requirements
URL	https://github.com/montilab/hypeR
Bug Reports	https://github.com/montilab/hypeR/issues

Suggests	tidyverse, devtools, testthat, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	hypeR_2.10.0.tar.gz
Windows Binary (x86_64)	hypeR_2.10.0.zip
macOS Binary (big-sur-x86_64)	hypeR_2.10.0.tgz
macOS Binary (sonoma-arm64)	hypeR_2.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hypeR
Package Short Url	https://bioconductor.org/packages/hypeR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive