ibh

This is the released version of ibh; for the devel version, see ibh.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: Release (3.23)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("ibh")):

Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay. ibh: Interaction Based Homogeneity for Evaluating Gene Lists. doi:10.18129/B9.bioc.ibh, R package version 1.60.0, https://bioconductor.org/packages/ibh.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ibh")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ibh")

ibh	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software
Version	1.60.0
In Bioconductor since	BioC 2.8 (R-2.13) (15.5 years)
License	GPL (>= 2)
Depends	simpIntLists
Imports
System Requirements
URL

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ibh_1.60.0.tar.gz
Windows Binary (x86_64)	ibh_1.60.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	ibh_1.60.0.tgz
macOS Binary (sonoma-arm64)	ibh_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ibh
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ibh
Package Short Url	https://bioconductor.org/packages/ibh/
Package Downloads Report	Download Stats