illuminaio

This is the released version of illuminaio; for the devel version, see illuminaio.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Parsing Illumina Microarray Output Files

Bioconductor version: Release (3.23)

Tools for parsing Illumina's microarray output files, including IDAT.

Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("illuminaio")):

Keith Baggerly, Henrik Bengtsson, Kasper Daniel Hansen, Matt Ritchie, Mike L. Smith. illuminaio: Parsing Illumina Microarray Output Files. doi:10.18129/B9.bioc.illuminaio, R package version 0.54.0, https://bioconductor.org/packages/illuminaio.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("illuminaio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("illuminaio")

Description of Encrypted IDAT Format	PDF
Introduction to illuminaio	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software
Version	0.54.0
In Bioconductor since	BioC 2.12 (R-3.0) (13.5 years)
License	GPL-2
Depends
Imports	base64
System Requirements
URL	https://github.com/HenrikBengtsson/illuminaio
Bug Reports	https://github.com/HenrikBengtsson/illuminaio/issues

Suggests	RUnit, BiocGenerics, IlluminaDataTestFiles (>= 1.0.2), BiocStyle
Linking To
Enhances
Depends On Me	EGSEA123, normalize450K, RnBeads, wateRmelon
Imports Me	bigmelon, ChAMP, crlmm, ENmix, methylumi, minfi
Suggests Me	limma
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	illuminaio_0.54.0.tar.gz
Windows Binary (x86_64)	illuminaio_0.54.0.zip
macOS Binary (big-sur-x86_64)	illuminaio_0.54.0.tgz
macOS Binary (sonoma-arm64)	illuminaio_0.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/illuminaio
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/illuminaio
Package Short Url	https://bioconductor.org/packages/illuminaio/
Package Downloads Report	Download Stats