meshr

This is the released version of meshr; for the devel version, see meshr.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Tools for conducting enrichment analysis of MeSH

Bioconductor version: Release (3.23)

A set of annotation maps describing the entire MeSH assembled using data from MeSH.

Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("meshr")):

Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota. meshr: Tools for conducting enrichment analysis of MeSH. doi:10.18129/B9.bioc.meshr, R package version 2.18.0, https://bioconductor.org/packages/meshr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("meshr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("meshr")

AnnotationHub-style MeSH ORA Framework from BioC 3.14	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics
Version	2.18.0
In Bioconductor since	BioC 2.14 (R-3.1) (12.5 years)
License	Artistic-2.0
Depends	R (>= 4.1.0)
Imports	markdown, rmarkdown, BiocStyle, knitr, methods, stats, utils, fdrtool, MeSHDbi, Category, S4Vectors, BiocGenerics, RSQLite
System Requirements
URL
Bug Reports	https://github.com/rikenbit/meshr/issues

Suggests
Linking To
Enhances
Depends On Me
Imports Me	scTensor
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	meshr_2.18.0.tar.gz
Windows Binary (x86_64)	meshr_2.18.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	meshr_2.18.0.tgz
macOS Binary (sonoma-arm64)	meshr_2.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/meshr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/meshr
Package Short Url	https://bioconductor.org/packages/meshr/
Package Downloads Report	Download Stats