microRNAome

This is the released version of microRNAome; for the devel version, see microRNAome.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

SummarizedExperiment for the microRNAome project

Bioconductor version: Release (3.23)

This package provides a SummarizedExperiment object of read counts for microRNAs across tissues, cell-types, and cancer cell-lines. The read count matrix was prepared and provided by the author of the study: Towards the human cellular microRNAome.

Author: Matthew N. McCall <mccallm at gmail.com>, Marc K. Halushka <mhalush1 at jhmi.edu>, Arun H. Patil <arun26feb at gmail.com>

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("microRNAome")):

Matthew N. McCall, Marc K. Halushka, Arun H. Patil. microRNAome: SummarizedExperiment for the microRNAome project. doi:10.18129/B9.bioc.microRNAome, R package version 1.34.0, https://bioconductor.org/packages/microRNAome.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("microRNAome")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CancerData, CellCulture, ExperimentData, RNASeqData, SequencingData, miRNAData
Version	1.34.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	GPL (>= 2)
Depends	R (>= 3.5.0), SummarizedExperiment
Imports
System Requirements
URL

Suggests	BiocGenerics, RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	microRNAome_1.34.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/microRNAome
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/microRNAome
Package Short Url	https://bioconductor.org/packages/microRNAome/
Package Downloads Report	Download Stats