rSWeeP

This is the released version of rSWeeP; for the devel version, see rSWeeP.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

Spaced Words Projection (SWeeP)

Bioconductor version: Release (3.23)

"Spaced Words Projection (SWeeP)" is a method for representing biological sequences using vectors preserving inter-sequence comparability.

Author: Camila Pereira Perico [com, cre, aut, cph] ORCID: 0000-0003-0186-4022 , Danrley Rafael Fernandes [aut], Mariane Gonçalves Kulik [aut] ORCID: 0009-0000-5432-3524 , Júlia Formighieri Varaschin [aut], Camilla Reginatto de Pierri [aut] ORCID: 0000-0002-6114-1734 , Ricardo Assunção Vialle [aut] ORCID: 0000-0003-3311-4197 , Roberto Tadeu Raittz [aut, cph] ORCID: 0000-0002-5271-991X

Maintainer: Camila P Perico <camilapp94 at gmail.com>

Citation (from within R, enter citation("rSWeeP")):

Camila Pereira Perico, Danrley Rafael Fernandes, Mariane Gonçalves Kulik, Júlia Formighieri Varaschin, Camilla Reginatto de Pierri, Ricardo Assunção Vialle, Roberto Tadeu Raittz. rSWeeP: Spaced Words Projection (SWeeP). doi:10.18129/B9.bioc.rSWeeP, R package version 1.24.0, https://bioconductor.org/packages/rSWeeP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rSWeeP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rSWeeP")

rSWeeP	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software
Version	1.24.0
In Bioconductor since	BioC 3.11 (R-4.0) (6.5 years)
License	GPL (>= 2)
Depends	foreach, doParallel, parallel, Biostrings, methods, utils
Imports	tools, stringi
System Requirements
URL

Suggests	Rtsne, ape, Seurat, knitr, rmarkdown, tictoc, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rSWeeP_1.24.0.tar.gz
Windows Binary (x86_64)	rSWeeP_1.24.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	rSWeeP_1.24.0.tgz
macOS Binary (sonoma-arm64)	rSWeeP_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rSWeeP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rSWeeP
Package Short Url	https://bioconductor.org/packages/rSWeeP/
Package Downloads Report	Download Stats