rWikiPathways

This is the released version of rWikiPathways; for the devel version, see rWikiPathways.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: Release (3.23)

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

Author: Egon Willighagen [aut, cre] ORCID: 0000-0001-7542-0286 , Alex Pico [aut] ORCID: 0000-0001-5706-2163

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("rWikiPathways")):

Egon Willighagen, Alex Pico. rWikiPathways: rWikiPathways - R client library for the WikiPathways API. doi:10.18129/B9.bioc.rWikiPathways, R package version 1.32.0, https://bioconductor.org/packages/rWikiPathways.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rWikiPathways")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")

1. Overview	HTML	R Script
4. Pathway Analysis	HTML	R Script
2. rWikiPathways and BridgeDbR	HTML	R Script
3. rWikiPathways and RCy3	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	MIT + file LICENSE
Depends
Imports	httr, utils, XML, rjson, data.table, RCurl, dplyr, tidyr, readr, stringr, purrr, lubridate
System Requirements
URL	https://github.com/wikipathways/rWikiPathways
Bug Reports	https://github.com/wikipathways/rWikiPathways/issues

Suggests	testthat, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	famat, NoRCE
Suggests Me	TRONCO
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rWikiPathways_1.32.0.tar.gz
Windows Binary (x86_64)	rWikiPathways_1.32.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	rWikiPathways_1.32.0.tgz
macOS Binary (sonoma-arm64)	rWikiPathways_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rWikiPathways
Package Short Url	https://bioconductor.org/packages/rWikiPathways/
Package Downloads Report	Download Stats