Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm

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Documentation for package ‘GeneGA’ version 1.58.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

GeneGA-package	Designing gene based on mRNA secondary structure and codon usage bias using Genetic algorithm, GeneGA includes the information of highly expressed genes of almost 200 genomes.
GeneCodon	Optimizing the codon usage of gene by replacing less usage codons with the most preference used codons or replacing the most preference used codons with less usage codons.
GeneFoldGA	the function optimizes gene merely considering mRNA secondary structure.
GeneFoldGA-class	Class "GeneFoldGA"
GeneGA	the function optimizes gene expression based on both mRNA secondary structure and codon usage bias
GeneGA-class	Class "GeneGA"
plotGeneGA	plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA-method	plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA-methods	plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA.GeneFoldGA	plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA.GeneGA	plotGeneGA methods of GeneGA and GeneFoldGA objects
show-method	Class "GeneFoldGA"
show-method	Class "GeneGA"
wSet	Codon Adaptation Index (CAI) w tables