epigenomic road map adventures

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Documentation for package ‘erma’ version 1.24.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

erma-package	epigenomic road map adventures
abbCIcols	epigenomic road map adventures
abbCIstates	epigenomic road map adventures
cellTypes	Class '"ErmaSet"'
cellTypes-method	Class '"ErmaSet"'
csProfile	create a ggplot2 visualization of chromatin states over genomic addresses for a family of cell types managed in an ErmaSet instance
erma	epigenomic road map adventures
ErmaSet-class	Class '"ErmaSet"'
farhSE	epigenomic road map adventures
genemodel	create GRanges instance with model for a gene
geneTxRange	create GRanges instance with model for a gene
makeErmaSet	Class '"ErmaSet"'
map2range	create GRanges instance with model for a gene
mapmeta	create a DataFrame instance providing metadata about the Epigenomics Roadmap
short_celltype	metadata on states of 25-state model of chromatin from ChromImpute, and on cell types in the epigenome road map of April 2015
stateProf	create a ggplot2 visualization of chromatin states over genomic addresses for a family of cell types managed in an ErmaSet instance
stateProfile	create a ggplot2 visualization of chromatin states over genomic addresses for a family of cell types managed in an ErmaSet instance
states_25	metadata on states of 25-state model of chromatin from ChromImpute, and on cell types in the epigenome road map of April 2015
subsetByRanges	Class '"ErmaSet"'