Evaluation of Bioinformatics Metrics

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Documentation for package ‘evaluomeR’ version 1.24.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

annotateClustersByMetric	Calculate the cluster ID from the optimal cluster per metric for each individual. annotateClustersByMetric
bioMetrics	Dataset: Metrics for biological pathways
evaluomeRSupportedCBI	Get supported CBIs in evaluomeR.
getDataQualityRange	Dataframe getter for 'qualityRange' function.
getMetricRangeByCluster	Get the range of each metric per cluster from the optimal cluster. getMetricRangeByCluster
getMetricRangeByCluster	Get the range of each metric per cluster from the optimal cluster. getMetricRangeByCluster
getMetricsRelevancy	Get the range of each metric per cluster from the optimal cluster. getMetricRangeByCluster
getOptimalKValue	Calculating the optimal value of k. getOptimalKValue
globalMetric	Global metric score defined by a prediction.
metricsCorrelations	Calculation of Pearson correlation coefficient.
ontMetrics	Dataset: Structural ontology metrics
plotMetricsBoxplot	Metric values as a boxplot.
plotMetricsCluster	Metric values clustering.
plotMetricsClusterComparison	Comparison between two clusterings as plot. plotMetricsClusterComparison
plotMetricsMinMax	Minimum and maximum metric values plot.
plotMetricsViolin	Metric values as violin plot.
quality	Goodness of classifications.
qualityRange	Goodness of classifications for a range of k clusters.
qualitySet	Goodness of classifications for a set of k clusters.
rnaMetrics	Dataset: RNA quality metrics
stability	Stability index.
stabilityRange	Stability index for a range of k clusters.
stabilitySet	Stability index for a set of k clusters.