Cluster Merging for Flow Cytometry Data

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Documentation for package ‘flowMerge’ version 2.56.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

flowMerge-package	Merging of mixture components for automated gating of flow cytometry data.
checkForRemoteErrors	Check output of snow clusters for errors
fitPiecewiseLinreg	Fit Piecewise Linear Regression for a list of flowMerge Objects
fitPiecewiseLinreg-method	Methods for fitPiecewiseLinreg in flowMerge package
fitPiecewiseLinreg-methods	Methods for fitPiecewiseLinreg in flowMerge package
flagOutliers	Update the flagOutliers slot in a flowMerge object
flagOutliers-method	Methods to update the flagOutliers slot in a flowMerge object.
flagOutliers-methods	Methods to update the flagOutliers slot in a flowMerge object.
flowClust.res	A flowClust model fitted to the rituximab data for 1:10 clusters.
flowMerge	Merging of mixture components for automated gating of flow cytometry data.
flowMerge-class	Class "flowMerge"
flowObj	Create a flowObj object from a flowClust and flowFrame object
flowObj-class	Class "flowObj"
getData-method	Class "flowMerge"
getData-method	Class "flowObj"
initPFlowMerge	Initialize a SNOW cluster for use with flowMerge
map	Map matrix of probabilities to class assignments.
merge	Merge clusters in flow cytometry data
merge,flowObj	Merge clusters in flow cytometry data
merge,flowObj,metric	Merge clusters in flow cytometry data
merge,flowObj-methods	Merge mixture components
merge-method	Class "flowObj"
merge-methods	Merge mixture components
mergeClusters	Cluster merging not meant to be called by the user
mergeClusters2	Cluster merging not meant to be called by the user
NENT	Extract the Normalized Entropy
pFlowClust	Parallelized FlowClust
pFlowMerge	Parellel call to flowMerge
plot,flowMerge	Methods for plotting flowMerge and flowObj classes
plot,flowObj	Methods for plotting flowMerge and flowObj classes
plot-method	Class "flowMerge"
plot-method	Class "flowObj"
plot-methods	Methods for plotting flowMerge and flowObj classes
ptree	Generate a Function to Plot The Merging Tree
RituximabFlowClustFit	A flowClust model fitted to the rituximab data for 1:10 clusters.
show-method	Describe a flowObj or flowMerge object
split-method	Split data in a flowMerge object by cluster
split-methods	Split data in a flowMerge object by cluster
summary-method	Summary methods for flowMerge
updateU	Update uncertainties