Analyze massively parallel reporter assays

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Documentation for package ‘mpra’ version 1.30.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

mpra-package	Analyze massively parallel reporter assays
compute_logratio	Compute activity measure (log-ratio) for each element.
getBarcode	Class '"MPRASet"'
getDNA	Class '"MPRASet"'
getEid	Class '"MPRASet"'
getEseq	Class '"MPRASet"'
getRNA	Class '"MPRASet"'
get_precision_weights	Get precision weights from the copy number-variance relationship.
mpra	Analyze massively parallel reporter assays
mpralm	Linear models for differential analysis of MPRA data
MPRASet	Class '"MPRASet"'
MPRASet-class	Class '"MPRASet"'
mpraSetAggExample	Example data for the mpra package.
mpraSetAllelicExample	Example data for the mpra package.
mpraSetExample	Example data for the mpra package.
normalize_counts	Total count normalization of DNA and RNA counts
show-method	Class '"MPRASet"'