Brings SingleCellExperiment to the Tidyverse
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Documentation for package ‘tidySingleCellExperiment’ version 1.18.1
Help Pages
| add_count | Count the observations in each group |
| add_count.SingleCellExperiment | Count the observations in each group |
| aggregate_cells | Aggregate cells |
| aggregate_cells-method | Aggregate cells |
| arrange | Order rows using column values |
| arrange.SingleCellExperiment | Order rows using column values |
| as_tibble | Coerce lists, matrices, and more to data frames |
| as_tibble.SingleCellExperiment | Coerce lists, matrices, and more to data frames |
| bind_cols | Efficiently bind multiple data frames by row and column |
| bind_cols.SingleCellExperiment | Efficiently bind multiple data frames by row and column |
| bind_rows | Efficiently bind multiple data frames by row and column |
| bind_rows.SingleCellExperiment | Efficiently bind multiple data frames by row and column |
| cell_type_df | Cell types of 80 PBMC single cells |
| count | Count the observations in each group |
| count.SingleCellExperiment | Count the observations in each group |
| distinct | Keep distinct/unique rows |
| distinct.SingleCellExperiment | Keep distinct/unique rows |
| extract | Extract a character column into multiple columns using regular expression groups |
| extract.SingleCellExperiment | Extract a character column into multiple columns using regular expression groups |
| filter | Keep rows that match a condition |
| filter.SingleCellExperiment | Keep rows that match a condition |
| formatting | Printing tibbles |
| full_join | Mutating joins |
| full_join.SingleCellExperiment | Mutating joins |
| ggplot | Create a new 'ggplot' from a 'tidySingleCellExperiment' |
| ggplot.SingleCellExperiment | Create a new 'ggplot' from a 'tidySingleCellExperiment' |
| glimpse | Get a glimpse of your data |
| glimpse.tidySingleCellExperiment | Get a glimpse of your data |
| group_by | Group by one or more variables |
| group_by.SingleCellExperiment | Group by one or more variables |
| group_split | Split data frame by groups |
| group_split.SingleCellExperiment | Split data frame by groups |
| inner_join | Mutating joins |
| inner_join.SingleCellExperiment | Mutating joins |
| join_features | join_features |
| join_features-method | join_features |
| join_transcripts | (DEPRECATED) Extract and join information for transcripts. |
| left_join | Mutating joins |
| left_join.SingleCellExperiment | Mutating joins |
| mutate | Create, modify, and delete columns |
| mutate.SingleCellExperiment | Create, modify, and delete columns |
| nest | Nest rows into a list-column of data frames |
| nest.SingleCellExperiment | Nest rows into a list-column of data frames |
| pbmc_small | pbmc_small |
| pbmc_small_nested_interactions | Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster. |
| pivot_longer | Pivot data from wide to long |
| pivot_longer.SingleCellExperiment | Pivot data from wide to long |
| plot_ly | Initiate a plotly visualization |
| plot_ly.SingleCellExperiment | Initiate a plotly visualization |
| Printing tibbles | |
| print.SingleCellExperiment | Printing tibbles |
| pull | Extract a single column |
| pull.SingleCellExperiment | Extract a single column |
| rename | Rename columns |
| rename.SingleCellExperiment | Rename columns |
| return_arguments_of | returns variables from an expression |
| right_join | Mutating joins |
| right_join.SingleCellExperiment | Mutating joins |
| rowwise | Group input by rows |
| rowwise.SingleCellExperiment | Group input by rows |
| sample_frac | Sample n rows from a table |
| sample_frac.SingleCellExperiment | Sample n rows from a table |
| sample_n | Sample n rows from a table |
| sample_n.SingleCellExperiment | Sample n rows from a table |
| select | Keep or drop columns using their names and types |
| select.SingleCellExperiment | Keep or drop columns using their names and types |
| separate | Separate a character column into multiple columns with a regular expression or numeric locations |
| separate.SingleCellExperiment | Separate a character column into multiple columns with a regular expression or numeric locations |
| slice | Subset rows using their positions |
| slice.SingleCellExperiment | Subset rows using their positions |
| slice_head | Subset rows using their positions |
| slice_head.SingleCellExperiment | Subset rows using their positions |
| slice_max | Subset rows using their positions |
| slice_max.SingleCellExperiment | Subset rows using their positions |
| slice_min | Subset rows using their positions |
| slice_min.SingleCellExperiment | Subset rows using their positions |
| slice_sample | Subset rows using their positions |
| slice_sample.SingleCellExperiment | Subset rows using their positions |
| slice_tail | Subset rows using their positions |
| slice_tail.SingleCellExperiment | Subset rows using their positions |
| summarise | Summarise each group down to one row |
| summarise.SingleCellExperiment | Summarise each group down to one row |
| summarize | Summarise each group down to one row |
| summarize.SingleCellExperiment | Summarise each group down to one row |
| tbl_format_header | Format the header of a tibble |
| tbl_format_header.tidySingleCellExperiment | Format the header of a tibble |
| tidy | tidy for 'SingleCellExperiment' |
| tidy.SingleCellExperiment | tidy for 'SingleCellExperiment' |
| unite | Unite multiple columns into one by pasting strings together |
| unite.SingleCellExperiment | Unite multiple columns into one by pasting strings together |
| unnest | Unnest a list-column of data frames into rows and columns |
| unnest.tidySingleCellExperiment_nested | Unnest a list-column of data frames into rows and columns |
| unnest_single_cell_experiment | Unnest a list-column of data frames into rows and columns |