Brings SummarizedExperiment to the Tidyverse

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Documentation for package ‘tidySummarizedExperiment’ version 1.18.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_tibble	Coerce lists, matrices, and more to data frames
as_tibble.SummarizedExperiment	Coerce lists, matrices, and more to data frames
bind_cols	Efficiently bind multiple data frames by row and column
bind_cols.RangedSummarizedExperiment	Efficiently bind multiple data frames by row and column
bind_cols.SummarizedExperiment	Efficiently bind multiple data frames by row and column
bind_rows	Efficiently bind multiple data frames by row and column
bind_rows.SummarizedExperiment	Efficiently bind multiple data frames by row and column
count	Count the observations in each group
count.SummarizedExperiment	Count the observations in each group
distinct	Keep distinct/unique rows
distinct.SummarizedExperiment	Keep distinct/unique rows
extract	Extract a character column into multiple columns using regular expression groups
extract.SummarizedExperiment	Extract a character column into multiple columns using regular expression groups
filter	Keep rows that match a condition
filter.SummarizedExperiment	Keep rows that match a condition
formatting	Printing tibbles
full_join	Mutating joins
full_join.SummarizedExperiment	Mutating joins
ggplot	Create a new 'ggplot' from a 'tidyseurat'
ggplot.SummarizedExperiment	Create a new 'ggplot' from a 'tidyseurat'
group_by	Group by one or more variables
group_by.SummarizedExperiment	Group by one or more variables
group_split	Split data frame by groups
group_split.SummarizedExperiment	Split data frame by groups
inner_join	Mutating joins
inner_join.SummarizedExperiment	Mutating joins
left_join	Mutating joins
left_join.SummarizedExperiment	Mutating joins
mutate	Create, modify, and delete columns
mutate.SummarizedExperiment	Create, modify, and delete columns
mutate_features	Mutate features
mutate_samples	Mutate samples
nest	Nest rows into a list-column of data frames
nest.SummarizedExperiment	Nest rows into a list-column of data frames
pasilla	Read counts of RNA-seq samples of Pasilla knock-down by Brooks et al.
pivot_longer	Pivot data from wide to long
pivot_longer.SummarizedExperiment	Pivot data from wide to long
pivot_wider	Pivot data from long to wide
pivot_wider.SummarizedExperiment	Pivot data from long to wide
plot_ly	Initiate a plotly visualization
plot_ly.SummarizedExperiment	Initiate a plotly visualization
plot_ly.tbl_df	Initiate a plotly visualization
print	Printing tibbles
print.SummarizedExperiment	Printing tibbles
pull	Extract a single column
pull.SummarizedExperiment	Extract a single column
rename	Rename columns
rename.SummarizedExperiment	Rename columns
right_join	Mutating joins
right_join.SummarizedExperiment	Mutating joins
rowwise	Group input by rows
rowwise.SummarizedExperiment	Group input by rows
sample_frac	Sample n rows from a table
sample_frac.SummarizedExperiment	Sample n rows from a table
sample_n	Sample n rows from a table
sample_n.SummarizedExperiment	Sample n rows from a table
se	Read counts of RNA-seq samples derived from Pasilla knock-down by Brooks et al.
select	Keep or drop columns using their names and types
select.SummarizedExperiment	Keep or drop columns using their names and types
separate	Separate a character column into multiple columns with a regular expression or numeric locations
separate.SummarizedExperiment	Separate a character column into multiple columns with a regular expression or numeric locations
slice	Subset rows using their positions
slice.SummarizedExperiment	Subset rows using their positions
slice_head	Subset rows using their positions
slice_max	Subset rows using their positions
slice_min	Subset rows using their positions
slice_sample	Subset rows using their positions
slice_tail	Subset rows using their positions
summarise	Summarise each group down to one row
summarise.SummarizedExperiment	Summarise each group down to one row
summarize	Summarise each group down to one row
summarize.SummarizedExperiment	Summarise each group down to one row
tbl_format_header	Format the header of a tibble
tbl_format_header.tidySummarizedExperiment	Format the header of a tibble
tidy	tidy for 'Seurat'
tidy.RangedSummarizedExperiment	tidy for 'Seurat'
tidy.SummarizedExperiment	tidy for 'Seurat'
unite	Unite multiple columns into one by pasting strings together
unite.SummarizedExperiment	Unite multiple columns into one by pasting strings together
unnest	Unnest a list-column of data frames into rows and columns
unnest.tidySummarizedExperiment_nested	Unnest a list-column of data frames into rows and columns
unnest_summarized_experiment	Unnest a list-column of data frames into rows and columns