ASpli

DOI: 10.18129/B9.bioc.ASpli    

Analysis of Alternative Splicing Using RNA-Seq

Bioconductor version: Release (3.12)

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Estefania Mancini <emancini at leloir.org.ar>

Citation (from within R, enter citation("ASpli")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")

 

PDF R Script ASpli
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version 2.0.0
In Bioconductor since BioC 3.4 (R-3.3) (4 years)
License GPL
Depends methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi
Imports GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ASpli_2.0.0.tar.gz
Windows Binary ASpli_2.0.0.zip
macOS 10.13 (High Sierra) ASpli_2.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ASpli
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASpli
Package Short Url https://bioconductor.org/packages/ASpli/
Package Downloads Report Download Stats

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