Aerith
visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics
Bioconductor version: 3.23 · Package version: 1.0.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Visualisation of peptide isotopic peaks and SIP peptide spectra match (PSM). Filtration of high quality PSM. Accurate isotopic abundance calculation of peptide and metabolites. Visualisation of SIP proteomics results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Aerith")Details
| Maintainer | Yi Xiong <yixiong@ou.edu> |
| Author | Yi Xiong [aut, cre] (ORCID: <https://orcid.org/0009-0005-4591-2366>) |
| License | GPL-3 |
| URL | https://github.com/xyz1396/Aerith |
| Bug Reports | https://github.com/xyz1396/Aerith/issues |
| System Requirements | C++17 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/Aerith/ |
Citation
From within R, enter citation("Aerith"):
Yi Xiong. Aerith: visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics. doi:10.18129/B9.bioc.Aerith, R package version 1.0.1, https://bioconductor.org/packages/Aerith.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- Aerith
- Input Data Format and File Handling in Aerith
- PSM Annotation and Visualization
- Score function test of PSM
- Theoretic spectra generation of SIP-labeled compound
- Theoretic spectra generation of SIP-labeled peptide
- Visualization of SIP proteomic result
Download
Follow the installation instructions to use this package in your R session.
| Source package | Aerith_1.0.1.tar.gz |
| Windows binary (x86_64) | Aerith_1.0.1.zip |
| macOS binary (arm64) | Aerith_1.0.1.tgz |
| macOS binary (x86_64) | Aerith_1.0.1.tgz |