BiocBuildReporter
Functions to process a bioconductor build report database
Bioconductor version: 3.23 · Package version: 1.0.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package reads remote parquet files that have processed Bioconductor build report logs. Users may query the tables directly for specific information or use pre-defined helper functions for common queries. The logs processed are from https://bioconductor.org/checkResults/. In the future we will extend this package out to include processing of r-universe logs.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocBuildReporter")Details
| Maintainer | Lori Shepherd <lori.shepherd@roswellpark.org> |
| Author | Sean Davis [aut], Lori Shepherd [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>) |
| License | Apache License (>= 2) |
| URL | https://github.com/lshep/BiocBuildReporter.git |
| Bug Reports | https://github.com/lshep/BiocBuildReporter/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/BiocBuildReporter/ |
Citation
From within R, enter citation("BiocBuildReporter"):
Sean Davis, Lori Shepherd. BiocBuildReporter: Functions to process a bioconductor build report database. doi:10.18129/B9.bioc.BiocBuildReporter, R package version 1.0.1, https://bioconductor.org/packages/BiocBuildReporter.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | BiocBuildReporter_1.0.1.tar.gz |
| Windows binary (x86_64) | BiocBuildReporter_1.0.1.zip |
| macOS binary (arm64) | BiocBuildReporter_1.0.1.tgz |
| macOS binary (x86_64) | BiocBuildReporter_1.0.1.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: arrow, dplyr, BiocFileCache
Suggests: BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, ggplot2, tidyr, stringr