CyTOFpower
Power analysis for CyTOF experiments
Bioconductor version: Release (3.19)
This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.
Author: Anne-Maud Ferreira [cre, aut] , Catherine Blish [aut], Susan Holmes [aut]
Maintainer: Anne-Maud Ferreira <anne-maud.ferreira at stanford.edu>
citation("CyTOFpower")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CyTOFpower")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CyTOFpower")
Power analysis for CyTOF experiments | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellBiology, FlowCytometry, SingleCell, Software, StatisticalMethod |
Version | 1.10.0 |
In Bioconductor since | BioC 3.14 (R-4.1) (3 years) |
License | LGPL-3 |
Depends | R (>= 4.1) |
Imports | CytoGLMM, diffcyt, DT, dplyr, ggplot2, magrittr, methods, rlang, stats, shiny, shinyFeedback, shinyjs, shinyMatrix, SummarizedExperiment, tibble, tidyr |
System Requirements | |
URL |
See More
Suggests | testthat (>= 3.0.0), BiocStyle, knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CyTOFpower_1.10.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | CyTOFpower_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CyTOFpower |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CyTOFpower |
Bioc Package Browser | https://code.bioconductor.org/browse/CyTOFpower/ |
Package Short Url | https://bioconductor.org/packages/CyTOFpower/ |
Package Downloads Report | Download Stats |