GenomicScores
Infrastructure to work with genomewide position-specific scores
Bioconductor version: Release (3.19)
Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.
Author: Robert Castelo [aut, cre], Pau Puigdevall [ctb], Pablo RodrÃguez [ctb]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R, enter
citation("GenomicScores")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicScores")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicScores")
An introduction to the GenomicScores package | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, AnnotationHubSoftware, Coverage, Genetics, Infrastructure, Sequencing, Software |
Version | 2.16.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5), S4Vectors(>= 0.7.21), GenomicRanges, methods, BiocGenerics(>= 0.13.8) |
Imports | stats, utils, XML, httr, Biobase, BiocManager, BiocFileCache, IRanges(>= 2.3.23), Biostrings, GenomeInfoDb, AnnotationHub, rhdf5, DelayedArray, HDF5Array |
System Requirements | |
URL | https://github.com/rcastelo/GenomicScores |
Bug Reports | https://github.com/rcastelo/GenomicScores/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GenomicScores_2.16.0.tar.gz |
Windows Binary | GenomicScores_2.16.0.zip (64-bit only) |
macOS Binary (x86_64) | GenomicScores_2.16.0.tgz |
macOS Binary (arm64) | GenomicScores_2.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenomicScores |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicScores |
Bioc Package Browser | https://code.bioconductor.org/browse/GenomicScores/ |
Package Short Url | https://bioconductor.org/packages/GenomicScores/ |
Package Downloads Report | Download Stats |