To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IdeoViz")

In most cases, you don't need to download the package archive at all.

IdeoViz

DOI: 10.18129/B9.bioc.IdeoViz    

Plots data (continuous/discrete) along chromosomal ideogram

Bioconductor version: Release (3.5)

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren

Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>

Citation (from within R, enter citation("IdeoViz")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IdeoViz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IdeoViz")

 

PDF R Script IdeoViz: a package for plotting simple data along ideograms
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL-2
Depends Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source IdeoViz_1.10.0.tar.gz
Windows Binary IdeoViz_1.10.0.zip
Mac OS X 10.11 (El Capitan) IdeoViz_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IdeoViz
Package Short Url http://bioconductor.org/packages/IdeoViz/
Package Downloads Report Download Stats

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