To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImmuneSpaceR")

In most cases, you don't need to download the package archive at all.

ImmuneSpaceR

DOI: 10.18129/B9.bioc.ImmuneSpaceR    

A Thin Wrapper around the ImmuneSpace Database

Bioconductor version: Release (3.5)

Provides a convenient API for accessing data sets within ImmuneSpace (www.immunespace.org), the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

Author: Greg Finak, Renan Sauteraud, Mike Jiang, Gil Guday, Leo Dashevskiy, Evan Henrich, Ju Yeong Kim

Maintainer: ImmuneSpace Package Maintainer <immunespace at gmail.com>

Citation (from within R, enter citation("ImmuneSpaceR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImmuneSpaceR")

Documentation

HTML R Script An introduction to the ImmuneSpaceR package
HTML R Script Downloading tables with getDataset
HTML R Script Handling expression matrices with ImmuneSpaceR
HTML R Script Reproducing an online report using ImmuneSpaceR: Correlation between HAI and flow cytometry in SDY269
HTML R Script Reproducing an online report using ImmuneSpaceR: Correlation of HAI/virus neutralizition titer and cell counts in SDY144
HTML R Script Reproducing an online report using ImmuneSpaceR: Plasmablast abundance in SDY180
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Software, ThirdPartyClient
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL-2
Depends
Imports methods, data.table, RCurl, Rlabkey (>= 2.1.127), Biobase, pheatmap, ggplot2, scales, stats, gtools, gplots, reshape2, plotly, heatmaply (>= 0.7.0), rjson, rmarkdown
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL https://github.com/RGLab/ImmuneSpaceR
BugReports https://github.com/RGLab/ImmuneSpaceR/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ImmuneSpaceR_1.4.0.tar.gz
Windows Binary ImmuneSpaceR_1.4.0.zip
Mac OS X 10.11 (El Capitan) ImmuneSpaceR_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ImmuneSpaceR
Package Short Url http://bioconductor.org/packages/ImmuneSpaceR/
Package Downloads Report Download Stats

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