MsDataHub
Mass Spectrometry Data on ExperimentHub
Bioconductor version: 3.23 · Package version: 1.12.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsDataHub")Details
| Maintainer | Laurent Gatto <laurent.gatto@uclouvain.be> |
| Author | Laurent Gatto [aut, cre] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Kristina Gomoryova [ctb] (ORCID: <https://orcid.org/0000-0003-4407-3917>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Guillaume Deflandre [ctb] (ORCID: <https://orcid.org/0009-0008-1257-2416>) |
| License | Artistic-2.0 |
| URL | https://rformassspectrometry.github.io/MsDataHub |
| Bug Reports | https://github.com/RforMassSpectrometry/MsDataHub/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/MsDataHub/ |
Citation
From within R, enter citation("MsDataHub"):
Laurent Gatto, Johannes Rainer. MsDataHub: Mass Spectrometry Data on ExperimentHub. doi:10.18129/B9.bioc.MsDataHub, R package version 1.12.1, https://bioconductor.org/packages/MsDataHub.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MsDataHub_1.12.1.tar.gz |
| Windows binary (x86_64) | MsDataHub_1.12.1.zip |
| macOS binary (arm64) | MsDataHub_1.12.1.tgz |
| macOS binary (x86_64) | MsDataHub_1.12.1.tgz |
Dependencies
Imports: ExperimentHub, utils
Suggests: ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures (>= 1.13.3)
Reverse dependencies
Imports Me (1): MsQuality
Suggests Me (14): MetaboAnnotation, MetaboAnnotatoR, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, PSMatch, QFeatures, scp, Spectra, SpectraQL, SpectriPy, xcms