PGSEA

DOI: 10.18129/B9.bioc.PGSEA    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Parametric Gene Set Enrichment Analysis

Bioconductor version: Release (3.12)

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Citation (from within R, enter citation("PGSEA")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Microarray, Software
Version 1.64.0
In Bioconductor since BioC 2.0 (R-2.5) (13.5 years)
License GPL-2
Depends R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
LinkingTo
Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
SystemRequirements
Enhances
URL
Depends On Me GeneExpressionSignature
Imports Me
Suggests Me gskb
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/PGSEA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PGSEA
Package Short Url https://bioconductor.org/packages/PGSEA/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: