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PROPS

PRObabilistic Pathway Score (PROPS)


Bioconductor version: Release (3.18)

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Author: Lichy Han

Maintainer: Lichy Han <lhan2 at stanford.edu>

Citation (from within R, enter citation("PROPS")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PROPS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPS")
PRObabilistic Pathway Scores (PROPS) HTML R Script
Reference Manual PDF

Details

biocViews Bayesian, Classification, GeneExpression, Software
Version 1.24.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL-2
Depends
Imports bnlearn, reshape2, sva, stats, utils, Biobase
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Suggests knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PROPS_1.24.0.tar.gz
Windows Binary PROPS_1.24.0.zip
macOS Binary (x86_64) PROPS_1.24.0.tgz
macOS Binary (arm64) PROPS_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PROPS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PROPS
Bioc Package Browser https://code.bioconductor.org/browse/PROPS/
Package Short Url https://bioconductor.org/packages/PROPS/
Package Downloads Report Download Stats