SMTrackR
SMTrackR: an R/Bioconductor package for mapping protein binding at individual DNA molecules
Bioconductor version: 3.23 · Package version: 1.0.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package uses exogenous enzyme imprinted information to map protein-DNA binding on individual sequenced DNA molecules. For example, GpC methyltransferase, CpG methyltransferase, and Adenine methyltransferases. Public datasets from such assays are compiled into tracks, and hosted at public servers like Galaxy for their seamless access by this package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SMTrackR")Details
| Maintainer | Satyanarayan Rao <satyanarayan.rao@bt.iitr.ac.in> |
| Author | Aashna Bansal [aut, ctb], Himani Barmola [aut, ctb], Shivam Yadav [aut, ctb], Satyanarayan Rao [aut, cre] (ORCID: <https://orcid.org/0000-0001-7678-3505>) |
| License | MIT + file LICENSE |
| URL | https://www.raolab.in |
| Bug Reports | https://github.com/satyanarayan-rao/SMTrackR |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneTarget, GenomeAssembly, NucleosomePositioning, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/SMTrackR/ |
Citation
From within R, enter citation("SMTrackR"):
Aashna Bansal, Himani Barmola, Shivam Yadav, Satyanarayan Rao. SMTrackR: SMTrackR: an R/Bioconductor package for mapping protein binding at individual DNA molecules. doi:10.18129/B9.bioc.SMTrackR, R package version 1.0.0, https://bioconductor.org/packages/SMTrackR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SMTrackR_1.0.0.tar.gz |
| Windows binary (x86_64) | SMTrackR_1.0.0.zip |
| macOS binary (arm64) | SMTrackR_1.0.0.tgz |
| macOS binary (x86_64) | SMTrackR_1.0.0.tgz |
Dependencies
Depends: R (>= 4.5)
Imports: jsonlite, GenomicRanges, rtracklayer, stringr, BiocFileCache, S4Vectors