To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("StarBioTrek")

In most cases, you don't need to download the package archive at all.

StarBioTrek

 

   

StarBioTrek

Bioconductor version: Release (3.4)

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Citation (from within R, enter citation("StarBioTrek")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("StarBioTrek")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("StarBioTrek")

 

PDF R Script StarBioTrek:Application Examples
HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, KEGG, Network, Pathways, Software
Version 1.0.3
In Bioconductor since BioC 3.4 (R-3.3) (< 6 months)
License GPL (>= 3)
Depends R (>= 3.3)
Imports SpidermiR, KEGGREST, org.Hs.eg.db, AnnotationDbi, e1071, ROCR, grDevices, igraph
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
SystemRequirements
Enhances
URL https://github.com/claudiacava/StarBioTrek
BugReports https://github.com/claudiacava/StarBioTrek/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source StarBioTrek_1.0.3.tar.gz
Windows Binary StarBioTrek_1.0.3.zip
Mac OS X 10.9 (Mavericks) StarBioTrek_1.0.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/StarBioTrek/tree/release-3.4
Package Short Url http://bioconductor.org/packages/StarBioTrek/
Package Downloads Report Download Stats

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