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TDbasedUFE

Tensor Decomposition Based Unsupervised Feature Extraction


Bioconductor version: Release (3.18)

This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("TDbasedUFE")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDbasedUFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDbasedUFE")
QuickStart HTML R Script
TDbasedUFE HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version 1.2.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License GPL-3
Depends
Imports GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny
System Requirements
URL https://github.com/tagtag/TDbasedUFE
Bug Reports https://github.com/tagtag/TDbasedUFE/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me TDbasedUFEadv
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TDbasedUFE_1.2.0.tar.gz
Windows Binary TDbasedUFE_1.2.0.zip
macOS Binary (x86_64) TDbasedUFE_1.2.0.tgz
macOS Binary (arm64) TDbasedUFE_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TDbasedUFE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TDbasedUFE
Bioc Package Browser https://code.bioconductor.org/browse/TDbasedUFE/
Package Short Url https://bioconductor.org/packages/TDbasedUFE/
Package Downloads Report Download Stats