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Tensor Decomposition Based Unsupervised Feature Extraction

Bioconductor version: Release (3.19)

This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at>

Citation (from within R, enter citation("TDbasedUFE")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

QuickStart HTML R Script
TDbasedUFE HTML R Script
Reference Manual PDF


biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version 1.4.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License GPL-3
Imports GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny
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Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
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Imports Me TDbasedUFEadv
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Follow Installation instructions to use this package in your R session.

Source Package TDbasedUFE_1.4.0.tar.gz
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macOS Binary (x86_64) TDbasedUFE_1.4.0.tgz
macOS Binary (arm64) TDbasedUFE_1.4.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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