Ularcirc

DOI: 10.18129/B9.bioc.Ularcirc    

Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Bioconductor version: Release (3.9)

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

Author: David Humphreys [aut, cre]

Maintainer: David Humphreys <d.humphreys at victorchang.edu.au>

Citation (from within R, enter citation("Ularcirc")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Ularcirc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Ularcirc")

 

HTML R Script Ularcirc.html
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews AlternativeSplicing, Annotation, Coverage, DataRepresentation, DifferentialSplicing, Genetics, Sequencing, Software, Visualization
Version 1.2.15
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License file LICENSE
Depends R (>= 3.4.0)
Imports data.table (>= 1.9.4), shiny, shinyFiles, gsubfn, Biostrings, GenomicFeatures, GenomeInfoDb, GenomeInfoDbData, Sushi, moments, DT, yaml, AnnotationHub, BSgenome, httpuv, mirbase.db, ggplot2, ggrepel
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Ularcirc_1.2.15.tar.gz
Windows Binary Ularcirc_1.2.15.zip
Mac OS X 10.11 (El Capitan) Ularcirc_1.2.15.tgz
Source Repository git clone https://git.bioconductor.org/packages/Ularcirc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Ularcirc
Package Short Url http://bioconductor.org/packages/Ularcirc/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive

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