alabaster.files
Wrappers to Save Common File Formats
Bioconductor version: 3.23 · Package version: 1.10.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Save common bioinformatics file formats within the alabaster framework. This includes BAM, BED, VCF, bigWig, bigBed, FASTQ, FASTA and so on. We save and load additional metadata for each file, and we support linkage between each file and its corresponding index.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.files")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | MIT + file LICENSE |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, Software |
| Package Short Url | https://bioconductor.org/packages/alabaster.files/ |
Citation
From within R, enter citation("alabaster.files"):
Aaron Lun. alabaster.files: Wrappers to Save Common File Formats. doi:10.18129/B9.bioc.alabaster.files, R package version 1.10.0, https://bioconductor.org/packages/alabaster.files.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | alabaster.files_1.10.0.tar.gz |
| Windows binary (x86_64) | alabaster.files_1.10.0.zip |
| macOS binary (arm64) | alabaster.files_1.10.0.tgz |
| macOS binary (x86_64) | alabaster.files_1.10.0.tgz |
Dependencies
Depends: alabaster.base
Imports: methods, S4Vectors, BiocGenerics, Rsamtools
Suggests: BiocStyle, rmarkdown, knitr, testthat, VariantAnnotation, rtracklayer, Biostrings