ampliQueso

DOI: 10.18129/B9.bioc.ampliQueso    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Analysis of amplicon enrichment panels

Bioconductor version: Release (3.8)

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

Author: Alicja Szabelska <alicja.szabelska at up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka at gmail.com>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("ampliQueso")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ampliQueso", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ampliQueso")

 

PDF R Script ampliQueso primer
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization
Version 1.20.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License GPL-2
Depends R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable
Imports edgeR, DESeq, samr
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ampliQueso_1.20.0.tar.gz
Windows Binary ampliQueso_1.20.0.zip
Mac OS X 10.11 (El Capitan) ampliQueso_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ampliQueso
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ampliQueso
Package Short Url http://bioconductor.org/packages/ampliQueso/
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