chromPlot

DOI: 10.18129/B9.bioc.chromPlot    

Global visualization tool of genomic data

Bioconductor version: Release (3.7)

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Author: Ricardo A. Verdugo and Karen Y. Orostica

Maintainer: Karen Y. Orostica <korostica09 at gmail.com>

Citation (from within R, enter citation("chromPlot")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromPlot")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromPlot")

 

PDF R Script General Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License GPL (>= 2)
Depends stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.1.0)
Imports
LinkingTo
Suggests qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chromPlot_1.8.0.tar.gz
Windows Binary chromPlot_1.8.0.zip
Mac OS X 10.11 (El Capitan) chromPlot_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chromPlot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chromPlot
Package Short Url http://bioconductor.org/packages/chromPlot/
Package Downloads Report Download Stats

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