drugfindR
Investigate iLINCS for candidate repurposable drugs
Bioconductor version: 3.23 · Package version: 1.0.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides a convenient way to access the LINCS Signatures available in the iLINCS database. These signatures include Consensus Gene Knockdown Signatures, Gene Overexpression signatures and Chemical Perturbagen Signatures. It also provides a way to enter your own transcriptomic signatures and identify concordant and discordant signatures in the LINCS database.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("drugfindR")Details
| Maintainer | Ali Sajid Imami <Ali.Sajid.Imami@gmail.com> |
| Author | Ali Sajid Imami [aut, cre] (ORCID: <https://orcid.org/0000-0003-3684-3539>), Smita Sahay [aut] (ORCID: <https://orcid.org/0009-0003-4377-8963>), Justin Fortune Creeden [aut] (ORCID: <https://orcid.org/0000-0003-3123-8401>), Robert Erne McCullumsmith [ctb, fnd] (ORCID: <https://orcid.org/0000-0001-6921-7150>) |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/CogDisResLab/drugfindR, https://cogdisreslab.github.io/drugfindR/ |
| Bug Reports | https://github.com/CogDisResLab/drugfindR/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, FunctionalPrediction, GeneSetEnrichment, Network, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/drugfindR/ |
Citation
From within R, enter citation("drugfindR"):
Ali Sajid Imami, Smita Sahay, Justin Fortune Creeden. drugfindR: Investigate iLINCS for candidate repurposable drugs. doi:10.18129/B9.bioc.drugfindR, R package version 1.0.0, https://bioconductor.org/packages/drugfindR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | drugfindR_1.0.0.tar.gz |
| Windows binary (x86_64) | drugfindR_1.0.0.zip |
| macOS binary (arm64) | drugfindR_1.0.0.tgz |
| macOS binary (x86_64) | drugfindR_1.0.0.tgz |