erccdashboard

This is the released version of erccdashboard; for the devel version, see erccdashboard.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Assess Differential Gene Expression Experiments with ERCC Controls

Bioconductor version: Release (3.23)

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Author: Sarah Munro, Steve Lund

Maintainer: Sarah Munro <sarah.munro at gmail.com>

Citation (from within R, enter citation("erccdashboard")):

Sarah Munro, Steve Lund. erccdashboard: Assess Differential Gene Expression Experiments with ERCC Controls. doi:10.18129/B9.bioc.erccdashboard, R package version 1.46.0, https://bioconductor.org/packages/erccdashboard.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("erccdashboard")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("erccdashboard")

erccdashboard introduction	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray
Version	1.46.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	GPL (>=2)
Depends	R (>= 4.0), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0)
Imports	edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr, knitr
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	erccdashboard_1.46.0.tar.gz
Windows Binary (x86_64)	erccdashboard_1.46.0.zip
macOS Binary (big-sur-x86_64)	erccdashboard_1.46.0.tgz
macOS Binary (sonoma-arm64)	erccdashboard_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/erccdashboard
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/erccdashboard
Package Short Url	https://bioconductor.org/packages/erccdashboard/
Package Downloads Report	Download Stats